PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018892
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 129aa    MW: 14013.5 Da    PI: 4.2864
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018892genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.21.7e-111241235
                  GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                          +Rrgp g++tLCnaCGl+++ kg+
  PGSC0003DMP400018892  1 MRRGPLGPRTLCNACGLMWANKGM 24
                          5*******************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003206.2E-9123IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-9128IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-10131No hitNo description
SuperFamilySSF577169.5E-7135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MRRGPLGPRT LCNACGLMWA NKGMLRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK  60
QHQEDMQEAT ENFADSSPFC IGSSSVNIDE EDNLDALANA SGTEFEIPAN FDEQIGIDSH  120
MSVHWPAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351718.12e-90PREDICTED: GATA transcription factor 24-like isoform X3
SwissprotQ6Z4338e-15GAT17_ORYSJ; GATA transcription factor 17
TrEMBLM1AQ432e-93M1AQ43_SOLTU; Uncharacterized protein
TrEMBLM1AQ463e-90M1AQ46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000277296e-87(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-15ZIM-LIKE 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]